Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs4819375 chr21:45539648 C/T 0.000127 118 38.83 51.38 28.43 KM Plot
THYM rs4819380 chr21:45560755 G/A 0.000107 119 38.58 50.65 28.43 KM Plot
THYM rs4862667 chr4:187136416 A/G 1.49E-8 118 12.63 41.77 41.7 KM Plot
THYM rs4862670 chr4:187145423 A/T 1.26E-8 119 12.63 41.77 40.67 KM Plot
THYM rs4873105 chr8:50141941 C/T 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs4873327 chr8:50106497 C/A 3.71E-10 118 46.27 49.75 25.83 KM Plot
THYM rs4873330 chr8:50107670 C/T 2.37E-10 119 46.27 50.1 25.83 KM Plot
THYM rs4873351 chr8:50216616 G/A 1.71E-10 119 46.43 49.75 25.83 KM Plot
THYM rs4903655 chr14:78306326 C/G 0.00017 119 24.17 46.6 38.23 KM Plot
THYM rs4903662 chr14:78336107 A/G 6.5E-5 119 25.83 38.48 50.03 KM Plot
THYM rs4909110 chr7:158787332 C/T 2.57E-6 118 41.77 36.4 27.77 KM Plot
THYM rs4937019 chr11:125572222 T/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs4951991 chr2:30736742 G/A 1.4E-8 118 37.37 50.1 33.13 KM Plot
THYM rs4951993 chr2:30774533 C/T 1.37E-8 119 33.13 50.1 38.13 KM Plot
THYM rs4951994 chr2:30781663 G/A 1.33E-8 119 36.4 50.1 33.13 KM Plot